Catch a lot of old URL's and update them. Also remove a couple of old files that aren't used.
Various updates due to repository reorganisation.
Moved location of CMS lib downloads.
Improved the javadoc generation in the Makefile setup. Now matches the ANT javadoc output. Also added links to external javadoc (such as pircbot) to make the pages more complete.
small modifications. removed packageutil reference in the usage changed the lib downloads to point to the external website
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